Mercurial > repos > big-tiandm > degseq

comparison tool_dependencies.xml @ 6:2cdd651b4d01 draft

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Uploaded
author big-tiandm
date Thu, 30 Oct 2014 04:55:50 -0400
parents 5d8069b349e5
children 8211c40fcb3c
comparison
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5:18064ec7efe4 6:2cdd651b4d01
2 <tool_dependency> 2 <tool_dependency>
3 <set_environment version="1.0"> 3 <set_environment version="1.0">
4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> 4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
5 </set_environment> 5 </set_environment>
6 6
7 <package name="R" version="2.11.0"> 7 <package name="R" version="3.0.1">
8 <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> 8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
9 </package> 9 </package>
10 10
11 <package name="degseq" version="1.20.0"> 11 <package name="degseq" version="1.20.0">
12 <install version="1.0"> 12 <install version="1.0">
13 <actions> 13 <actions>
14 <action type="set_environment_for_install"> 14 <action type="set_environment_for_install">
15 <repository changeset_revision="5824d2b3bc8b" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu"> 15 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
16 <package name="R" version="2.11.0" /> 16 <package name="R" version="3.0.1" />
17 </repository> 17 </repository>
18 </action> 18 </action>
19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> 19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
20 </actions> 20 </actions>
21 </install> 21 </install>