Mercurial > repos > big-tiandm > degseq

comparison DEGseq_2.pl @ 7:736f53de6964 draft

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author big-tiandm
date Fri, 14 Nov 2014 04:05:45 -0500
parents 0e63c50295bc
children 9c8c0fdb1717
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6:2cdd651b4d01 7:736f53de6964
42 else{ 42 else{
43 print OUT "DEGexp(geneExpMatrix1=geneExpMatrix1, geneCol1=1, expCol1=c(2), groupLabel1=\"$mark1\",geneExpMatrix2=geneExpMatrix2, geneCol2=1, expCol2=c(2), groupLabel2=\"$mark2\",outputDir=outputdir,method=\"MARS\")\n"; 43 print OUT "DEGexp(geneExpMatrix1=geneExpMatrix1, geneCol1=1, expCol1=c(2), groupLabel1=\"$mark1\",geneExpMatrix2=geneExpMatrix2, geneCol2=1, expCol2=c(2), groupLabel2=\"$mark2\",outputDir=outputdir,method=\"MARS\")\n";
44 } 44 }
45 close OUT; 45 close OUT;
46 46
47 print LOG "Prepare for DEGseq!\t";
48 print LOG `date`;
49 print LOG "\n";
50 47
51 system("R CMD BATCH $fileout"); 48 system("R CMD BATCH $fileout");
52 49
53 wait; 50 wait;
54 51