Mercurial > repos > big-tiandm > degseq

comparison tool_dependencies.xml @ 10:8211c40fcb3c draft

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Uploaded
author big-tiandm
date Fri, 14 Nov 2014 20:57:28 -0500
parents 2cdd651b4d01
children bd59a7d791b5
comparison
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9:7a94f0a9f1c4 10:8211c40fcb3c
2 <tool_dependency> 2 <tool_dependency>
3 <set_environment version="1.0"> 3 <set_environment version="1.0">
4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> 4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
5 </set_environment> 5 </set_environment>
6 6
7 <package name="R" version="3.0.1"> 7 <!--package name="R" version="3.0.1">
8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> 8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
9 </package> 9 </package>
10 10
11 <package name="degseq" version="1.20.0"> 11 <package name="degseq" version="1.20.0">
12 <install version="1.0"> 12 <install version="1.0">
19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> 19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
20 </actions> 20 </actions>
21 </install> 21 </install>
22 22
23 23
24 </package!-->
25
26
27 <package name="R" version="3.0.1">
28 <install version="1.0">
29 <actions>
30 <action type="set_environment_for_install">
31 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
32 <package name="R" version="3.0.1" />
33 </repository>
34 </action>
35 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
36 </actions>
37 </install>
38
39
24 </package> 40 </package>
25 41
26 42
27 </tool_dependency> 43 </tool_dependency>