Mercurial > repos > big-tiandm > degseq

diff tool_dependencies.xml @ 15:1f49db503877 draft

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Uploaded
author big-tiandm
date Sat, 15 Nov 2014 00:25:53 -0500
parents e10ada1be34d
children d5fe2e8bd819
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Nov 14 23:01:13 2014 -0500
+++ b/tool_dependencies.xml	Sat Nov 15 00:25:53 2014 -0500
@@ -18,10 +18,12 @@
               </action>
 		      <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
 
-			  <action type="shell_command">RPATH=`which R` </action>
+			  
 
 			  <action type="set_environment">
-                 <environment_variable name="PATH" action="prepend_to">$RPATH</environment_variable>
+                 <environment_variable name="PATH" action="prepend_to">
+					<action type="shell_command">which R</action>
+				</environment_variable>
               </action>
 		   
 		   </actions>