Mercurial > repos > big-tiandm > degseq

diff tool_dependencies.xml @ 4:5d8069b349e5 draft

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author big-tiandm
date Thu, 30 Oct 2014 03:14:12 -0400
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children 2cdd651b4d01
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Oct 30 03:14:12 2014 -0400
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
+    </set_environment>
+
+	<package name="R" version="2.11.0">
+	   <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+	</package>
+
+	<package name="degseq" version="1.20.0">
+		<install version="1.0">
+		   <actions>
+		      <action type="set_environment_for_install">
+                    <repository changeset_revision="5824d2b3bc8b" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu">
+                        <package name="R" version="2.11.0" />
+                    </repository>
+              </action>
+		      <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
+		   </actions>
+		</install>
+
+
+	</package>
+
+
+</tool_dependency>