Mercurial > repos > big-tiandm > degseq

diff tool_dependencies.xml @ 10:8211c40fcb3c draft

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Uploaded
author big-tiandm
date Fri, 14 Nov 2014 20:57:28 -0500
parents 2cdd651b4d01
children bd59a7d791b5
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Nov 14 20:57:14 2014 -0500
+++ b/tool_dependencies.xml	Fri Nov 14 20:57:28 2014 -0500
@@ -4,7 +4,7 @@
         <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
     </set_environment>
 
-	<package name="R" version="3.0.1">
+	<!--package name="R" version="3.0.1">
 	   <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
 	</package>
 
@@ -21,6 +21,22 @@
 		</install>
 
 
+	</package!-->
+
+
+	<package name="R" version="3.0.1">
+		<install version="1.0">
+		   <actions>
+		      <action type="set_environment_for_install">
+                    <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                        <package name="R" version="3.0.1" />
+                    </repository>
+              </action>
+		      <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
+		   </actions>
+		</install>
+
+
 	</package>