<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
    </set_environment>

	<package name="R" version="3.0.1">
	   <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"/>
	</package>

	<package name="degseq" version="1.20.0">
		<install version="1.0">
		   <actions>
		      <action type="set_environment_for_install">
                    <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True">
                        <package name="R" version="3.0.1" />
                    </repository>
              </action>
		      <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>

			  

			  <action type="set_environment">
                 <environment_variable name="PATH" action="prepend_to">
					<action type="shell_command">which R</action>
				</environment_variable>
              </action>
		   
		   </actions>
		</install>


	</package>



</tool_dependency>