# HG changeset patch
# User big-tiandm
# Date 1416016648 18000
# Node ID 8211c40fcb3c40266d279b3a5a8d3ac4a8c00107
# Parent  7a94f0a9f1c40c597889d7e4366e27d358cb2f76
Uploaded

diff -r 7a94f0a9f1c4 -r 8211c40fcb3c tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Nov 14 20:57:14 2014 -0500
+++ b/tool_dependencies.xml	Fri Nov 14 20:57:28 2014 -0500
@@ -4,7 +4,7 @@
         <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
     </set_environment>
 
-	<package name="R" version="3.0.1">
+	<!--package name="R" version="3.0.1">
 	   <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
 	</package>
 
@@ -21,6 +21,22 @@
 		</install>
 
 
+	</package!-->
+
+
+	<package name="R" version="3.0.1">
+		<install version="1.0">
+		   <actions>
+		      <action type="set_environment_for_install">
+                    <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                        <package name="R" version="3.0.1" />
+                    </repository>
+              </action>
+		      <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
+		   </actions>
+		</install>
+
+
 	</package>