|
25
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="fastx_toolkit" version="0.0.13">
|
|
|
4 <repository changeset_revision="ec66ae4c269b" name="package_fastx_toolkit_0_0_13" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6 <package name="bowtie" version="0.12.7">
|
|
|
7 <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
|
|
|
8 </package>
|
|
|
9 <set_environment version="1.0">
|
|
|
10 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
|
|
|
11 </set_environment>
|
|
|
12 <package name="R" version="2.11.0">
|
|
|
13 <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
|
|
|
14 </package>
|
|
|
15 <package name="ViennaRNA" version="2.1.7">
|
|
|
16 <!--install version="1.0">
|
|
|
17 <actions>
|
|
|
18 <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.7.tar.gz</action>
|
|
|
19 <action type="shell_command">./configure</action>
|
|
|
20 <action type="shell_command">make</action>
|
|
|
21 <action type="shell_command">make install</action>
|
|
|
22 <action type="set_environment">
|
|
|
23 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
|
|
|
24 </action>
|
|
|
25 </actions>
|
|
|
26 </install-->
|
|
|
27 </package>
|
|
|
28 </tool_dependency>
|
