Mercurial > repos > big-tiandm > mirplant2

comparison tool_dependencies.xml @ 50:7b5a48b972e9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author big-tiandm
date Fri, 05 Dec 2014 00:11:02 -0500
parents f008ab2cadc6
children
comparison
equal deleted inserted replaced
49:f008ab2cadc6 50:7b5a48b972e9
24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
25 </action> 25 </action>
26 </actions> 26 </actions>
27 </install> 27 </install>
28 </package> 28 </package>
29 <package name="R" version="3.0.1">
30 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
31
32 <install version="1.0">
33 <actions>
34 <action type="set_environment_for_install">
35 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
36 <package name="R" version="3.0.1" />
37 </repository>
38 </action>
39 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
40 <action type="shell_command">echo "export PATH=$PATH" &gt; $INSTALL_DIR/env.sh </action>
41 <action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action>
42
43 </actions>
44 </install>
45 </package>
46
47 <package name="threads" version="1.96">
48 <install version="1.0">
49 <actions>
50 <action type="download_by_url">http://www.cpan.org/authors/id/J/JD/JDHEDDEN/threads-1.96.tar.gz</action>
51 <action type="make_directory">$INSTALL_DIR/lib/perl5</action>
52 <action type="shell_command">
53 perl Makefile.PL INSTALL_BASE=$INSTALL_DIR &amp;&amp;
54 make &amp;&amp;
55 make install
56 </action>
57 <action type="set_environment">
58 <environment_variable action="append_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5/:$INSTALL_DIR/lib/perl5/x86_64-linux-gnu-thread-multi/</environment_variable>
59 </action>
60 </actions>
61 </install>
62 </package>
63
64
65 <package name="Parallel-ForkManager" version="1.06">
66 <install version="1.0">
67 <actions>
68 <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/Parallel-ForkManager-1.06.tar.gz</action>
69 <action type="make_directory">$INSTALL_DIR/lib/perl5</action>
70 <action type="shell_command">
71 perl Makefile.PL INSTALL_BASE=$INSTALL_DIR &amp;&amp;
72 make &amp;&amp;
73 make install
74 </action>
75 <action type="set_environment">
76 <environment_variable action="append_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5/:$INSTALL_DIR/lib/perl5/x86_64-linux-gnu-thread-multi/</environment_variable>
77 </action>
78 </actions>
79 </install>
80 </package>
81
82 <package name="Boost-Graph" version="1.4_001">
83 <install version="1.0">
84 <actions>
85 <action type="download_by_url">http://www.cpan.org/authors/id/D/DU/DUFFEE/Boost-Graph-1.4_001.tar.gz</action>
86 <action type="make_directory">$INSTALL_DIR/lib/perl5</action>
87 <action type="shell_command">
88 perl Makefile.PL INSTALL_BASE=$INSTALL_DIR &amp;&amp;
89 ls &amp;&amp;
90 make &amp;&amp;
91 make install
92 </action>
93 <action type="set_environment">
94 <environment_variable action="append_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5/:$INSTALL_DIR/lib/perl5/x86_64-linux-gnu-thread-multi/</environment_variable>
95 </action>
96 </actions>
97 </install>
98 </package>
29 99
30 <package name="SVG" version="2.59"> 100 <package name="SVG" version="2.59">
31 <install version="1.0"> 101 <install version="1.0">
32 <actions> 102 <actions>
33 <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/SVG-2.59.tar.gz</action> 103 <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/SVG-2.59.tar.gz</action>