Mercurial > repos > big-tiandm > mirplant2
comparison tool_dependencies.xml @ 50:7b5a48b972e9 draft
Uploaded
author | big-tiandm |
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date | Fri, 05 Dec 2014 00:11:02 -0500 |
parents | f008ab2cadc6 |
children |
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49:f008ab2cadc6 | 50:7b5a48b972e9 |
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24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
25 </action> | 25 </action> |
26 </actions> | 26 </actions> |
27 </install> | 27 </install> |
28 </package> | 28 </package> |
29 <package name="R" version="3.0.1"> | |
30 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
31 | |
32 <install version="1.0"> | |
33 <actions> | |
34 <action type="set_environment_for_install"> | |
35 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> | |
36 <package name="R" version="3.0.1" /> | |
37 </repository> | |
38 </action> | |
39 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> | |
40 <action type="shell_command">echo "export PATH=$PATH" > $INSTALL_DIR/env.sh </action> | |
41 <action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action> | |
42 | |
43 </actions> | |
44 </install> | |
45 </package> | |
46 | |
47 <package name="threads" version="1.96"> | |
48 <install version="1.0"> | |
49 <actions> | |
50 <action type="download_by_url">http://www.cpan.org/authors/id/J/JD/JDHEDDEN/threads-1.96.tar.gz</action> | |
51 <action type="make_directory">$INSTALL_DIR/lib/perl5</action> | |
52 <action type="shell_command"> | |
53 perl Makefile.PL INSTALL_BASE=$INSTALL_DIR && | |
54 make && | |
55 make install | |
56 </action> | |
57 <action type="set_environment"> | |
58 <environment_variable action="append_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5/:$INSTALL_DIR/lib/perl5/x86_64-linux-gnu-thread-multi/</environment_variable> | |
59 </action> | |
60 </actions> | |
61 </install> | |
62 </package> | |
63 | |
64 | |
65 <package name="Parallel-ForkManager" version="1.06"> | |
66 <install version="1.0"> | |
67 <actions> | |
68 <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/Parallel-ForkManager-1.06.tar.gz</action> | |
69 <action type="make_directory">$INSTALL_DIR/lib/perl5</action> | |
70 <action type="shell_command"> | |
71 perl Makefile.PL INSTALL_BASE=$INSTALL_DIR && | |
72 make && | |
73 make install | |
74 </action> | |
75 <action type="set_environment"> | |
76 <environment_variable action="append_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5/:$INSTALL_DIR/lib/perl5/x86_64-linux-gnu-thread-multi/</environment_variable> | |
77 </action> | |
78 </actions> | |
79 </install> | |
80 </package> | |
81 | |
82 <package name="Boost-Graph" version="1.4_001"> | |
83 <install version="1.0"> | |
84 <actions> | |
85 <action type="download_by_url">http://www.cpan.org/authors/id/D/DU/DUFFEE/Boost-Graph-1.4_001.tar.gz</action> | |
86 <action type="make_directory">$INSTALL_DIR/lib/perl5</action> | |
87 <action type="shell_command"> | |
88 perl Makefile.PL INSTALL_BASE=$INSTALL_DIR && | |
89 ls && | |
90 make && | |
91 make install | |
92 </action> | |
93 <action type="set_environment"> | |
94 <environment_variable action="append_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5/:$INSTALL_DIR/lib/perl5/x86_64-linux-gnu-thread-multi/</environment_variable> | |
95 </action> | |
96 </actions> | |
97 </install> | |
98 </package> | |
29 | 99 |
30 <package name="SVG" version="2.59"> | 100 <package name="SVG" version="2.59"> |
31 <install version="1.0"> | 101 <install version="1.0"> |
32 <actions> | 102 <actions> |
33 <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/SVG-2.59.tar.gz</action> | 103 <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/SVG-2.59.tar.gz</action> |