Mercurial > repos > big-tiandm > mirplant2

comparison preProcess.xml @ 52:8b8c356e6db5 draft

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Uploaded
author big-tiandm
date Fri, 05 Dec 2014 01:28:46 -0500
parents 7b5a48b972e9
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51:3202911efdae 52:8b8c356e6db5
99 <option value="yes" selected="true">yes</option> 99 <option value="yes" selected="true">yes</option>
100 <option value="no">no</option> 100 <option value="no">no</option>
101 </param> 101 </param>
102 <when value="yes"> 102 <when value="yes">
103 <!--param name="rfam" type="data" label="rfam sequence file" /--> 103 <!--param name="rfam" type="data" label="rfam sequence file" /-->
104 <when value="yes">
105 <!--param name="rfam" type="data" label="rfam sequence file" /-->
106 <conditional name="reference_rfam"> 104 <conditional name="reference_rfam">
107 <param name="source" type="select" label="Will you select a reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options"> 105 <param name="source" type="select" label="Will you select a reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options">
108 <option value="indexed">Use a built-in index</option> 106 <option value="indexed">Use a built-in index</option>
109 <option value="history">Use one from the history</option> 107 <option value="history">Use one from the history</option>
110 </param> 108 </param>
121 </when> 119 </when>
122 </conditional> 120 </conditional>
123 121
124 <param name="v" type="integer" value="0" label="report end-to-end hits less than v mismatches for rfam mapping"/> 122 <param name="v" type="integer" value="0" label="report end-to-end hits less than v mismatches for rfam mapping"/>
125 </when> 123 </when>
126 </conditional> <!-- params --> 124 </conditional>
125
126
127 127
128 </inputs> 128 </inputs>
129 129
130 <outputs> 130 <outputs>
131 <data format="html" name="preprocess result" from_work_dir="preProcess/preprocessResult.html" label="${tool.name} on ${on_string}: preprocess result"/> 131 <data format="html" name="preprocess result" from_work_dir="preProcess/preprocessResult.html" label="${tool.name} on ${on_string}: preprocess result"/>