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comparison miRPlant.xml @ 46:ca05d68aca13 draft

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author big-tiandm
date Thu, 13 Nov 2014 22:43:35 -0500
parents 0c4e11018934
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45:2cb6add23dfe 46:ca05d68aca13
1 <tool id="plant_microRNA_v1" name="miRPlant" veision="1.0.0"> 1 <tool id="plant_microRNA_v1" name="miRPlant" veision="1.0.0">
2 <description>tool for plant microRNA analisis</description> 2 <description>tool for plant microRNA analisis</description>
3 3
4 <requirements> 4 <requirements>
5 <requirement type="package" version="0.0.13">fastx_toolkit </requirement>
6 <requirement type="package" version="0.12.7">bowtie</requirement>
5 <requirement type="set_environment">SCRIPT_PATH</requirement> 7 <requirement type="set_environment">SCRIPT_PATH</requirement>
6 <requirement type="package" version="0.12.7">bowtie</requirement> 8 <!--requirement type="package" version="3.0.1">R</requirement!-->
7 <requirement type="package" version="3.0.1">R</requirement> 9 <requirement type="package" version="2.59">SVG</requirement>
8 <requirement type="package" version="0.0.13">fastx_toolkit </requirement>
9 <requirement type="package" version="1.5.0">libx11</requirement>
10 <requirement type="package" version="2.1.8">ViennaRNA</requirement> 10 <requirement type="package" version="2.1.8">ViennaRNA</requirement>
11 </requirements> 11 </requirements>
12 12
13 <!--command interpreter="perl">miPlant.pl -i $input -format $format -gfa $gfa -idx $index -pre $pre -mat $mat -rfam $rfam -idx2 $idx2 -D $D -a $a -M $M -min $min -max $max -mis $mis -e $e -f $f -v $v -r $r -dis $dis -flank $flank -mfe $mfe -t $t -o $output</command--> 13 <!--command interpreter="perl">miPlant.pl -i $input -format $format -gfa $gfa -idx $index -pre $pre -mat $mat -rfam $rfam -idx2 $idx2 -D $D -a $a -M $M -min $min -max $max -mis $mis -e $e -f $f -v $v -r $r -dis $dis -flank $flank -mfe $mfe -t $t -o $output</command-->
14 14