--- a/rfam.pl	Thu Nov 13 22:43:35 2014 -0500
+++ b/rfam.pl	Wed Dec 03 01:54:29 2014 -0500
@@ -12,7 +12,7 @@
 use File::Basename;
 
 my %opts;
-GetOptions(\%opts,"i=s","ref=s","index:s","v:i","p:i","o=s","time:s","h");
+GetOptions(\%opts,"i=s","ref=s","index:s","v:i","p:i","o=s","h");
 if (!(defined $opts{i} and defined $opts{o} ) || defined $opts{h}) { #necessary arguments
 &usage;
 }
@@ -31,10 +31,8 @@
 
 
 my $time=Time();
-if (defined $opts{'time'}) {
-	$time=$opts{'time'};
-}
-my $mapdir=$dir."/rfam_match_".$time;
+
+my $mapdir=$dir."/rfam_match";
 if(not -d $mapdir){
 	mkdir $mapdir;
 }
@@ -95,7 +93,6 @@
 -p/--threads <int> number of alignment threads to launch (default: 1)
 
 -o output directory 
--time sting #make directory time,default is the local time
 -h help
 USAGE
 exit(1);