Mercurial > repos > big-tiandm > mirplant2

diff tool_dependencies.xml @ 46:ca05d68aca13 draft

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author big-tiandm
date Thu, 13 Nov 2014 22:43:35 -0500
parents 0c4e11018934
children
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Oct 30 21:29:35 2014 -0400
+++ b/tool_dependencies.xml	Thu Nov 13 22:43:35 2014 -0500
@@ -9,9 +9,9 @@
     <set_environment version="1.0">
         <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
     </set_environment>
-	<package name="R" version="3.0.1">
-	   <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
-	</package>
+	<!--package name="R" version="3.0.1">
+	   <repository name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
+	</package!-->
 
 	<package name="ViennaRNA" version="2.1.8">
 	   <install version="1.0">
@@ -26,4 +26,23 @@
 		   </actions>
 	   </install>
 	</package>
+
+	<package name="SVG" version="2.59">
+	   <install version="1.0">
+		   <actions>
+		     <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/SVG-2.59.tar.gz</action>
+			<action type="make_directory">$INSTALL_DIR/lib/perl5</action>
+			<action type="shell_command">
+				perl Makefile.PL INSTALL_BASE=$INSTALL_DIR &amp;&amp;
+				make &amp;&amp;
+				make install 
+			</action>
+			<action type="set_environment">
+				<environment_variable action="append_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5/:$INSTALL_DIR/lib/perl5/x86_64-linux-gnu-thread-multi/</environment_variable>	
+			</action>
+		   </actions>
+	   </install>
+	</package>
+
+
 </tool_dependency>