Mercurial > repos > big-tiandm > sirna_plant

comparison tool_dependencies.xml @ 33:09fefe8db1d0 draft default tip

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author big-tiandm
date Sat, 15 Nov 2014 01:33:45 -0500
parents 9492b7987604
children
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32:399d8dbdedd6 33:09fefe8db1d0
7 <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <set_environment version="1.0"> 9 <set_environment version="1.0">
10 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> 10 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
11 </set_environment> 11 </set_environment>
12
12 <package name="R" version="3.0.1"> 13 <package name="R" version="3.0.1">
13 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> 14 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"/>
14 </package>
15 15
16 <package name="degseq" version="1.20.0">
17 <install version="1.0"> 16 <install version="1.0">
18 <actions> 17 <actions>
19 <action type="set_environment_for_install"> 18 <action type="set_environment_for_install">
20 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 19 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True">
21 <package name="R" version="3.0.1" /> 20 <package name="R" version="3.0.1" />
22 </repository> 21 </repository>
23 </action> 22 </action>
24 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> 23 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
25 </actions> 24 <action type="shell_command">echo "export PATH=$PATH" > $INSTALL_DIR/env.sh </action>
25 <action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action>
26
27 </actions>
26 </install> 28 </install>
27 </package> 29 </package>
28 30
29 <package name="threads" version="1.96"> 31 <package name="threads" version="1.96">
30 <install version="1.0"> 32 <install version="1.0">