Mercurial > repos > big-tiandm > sirna_plant

diff matching.pl @ 13:a8c011dc575b draft

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author big-tiandm
date Wed, 29 Oct 2014 04:19:42 -0400
parents 07745c0958dd
children
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--- a/matching.pl	Wed Oct 29 04:19:04 2014 -0400
+++ b/matching.pl	Wed Oct 29 04:19:42 2014 -0400
@@ -39,7 +39,7 @@
 }
 
 ### genome mapping
-`bowtie -v $mis -f -p $threads -m $hits -a --best --strata $index $filein --al genome_mapped.fa --un genome_not_mapped.fa > genome_mapped.bwt`;
+`bowtie -v $mis -f -p $threads -m $hits -a --best --strata $index $filein --al genome_mapped.fa --un genome_not_mapped.fa > genome_mapped.bwt 2> run.log`;
 
 #`convert_bowtie_to_blast.pl  genome_mapped.bwt genome_mapped.fa $genome > genome_mapped.bst`;