Mercurial > repos > big-tiandm > sirna_plant
view tool_dependencies.xml @ 13:a8c011dc575b draft
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author | big-tiandm |
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date | Wed, 29 Oct 2014 04:19:42 -0400 |
parents | e885b3d4444e |
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<?xml version="1.0"?> <tool_dependency> <package name="fastx_toolkit" version="0.0.13"> <repository changeset_revision="ec66ae4c269b" name="package_fastx_toolkit_0_0_13" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="bowtie" version="0.12.7"> <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <set_environment version="1.0"> <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> </set_environment> <package name="R" version="2.11.0"> <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> <install version="1.0"> <actions> <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> </actions> </install> </package> <package name="libx11" version="1.5.0"> <repositoty name="package_libx11_1_5_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <package name="threads" version="1.96"> <install version="1.0"> <actions> <action type="download_by_url">http://www.cpan.org/authors/id/J/JD/JDHEDDEN/threads-1.96.tar.gz</action> <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action> <action type="shell_command">make</action> <action type="shell_command">make install</action> <action type="set_environment"> <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable> </action> </actions> </install> </package> <package name="Parallel-ForkManager" version="1.06"> <install version="1.0"> <actions> <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/Parallel-ForkManager-1.06.tar.gz</action> <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action> <action type="shell_command">make</action> <action type="shell_command">make install</action> <action type="set_environment"> <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable> </action> </actions> </install> </package> <package name="SVG" version="2.59"> <install version="1.0"> <actions> <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/SVG-2.59.tar.gz</action> <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action> <action type="shell_command">make</action> <action type="shell_command">make install</action> <action type="set_environment"> <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable> </action> </actions> </install> </package> <package name="Boost-Graph" version="1.4"> <install version="1.0"> <actions> <action type="download_by_url">http://www.cpan.org/authors/id/D/DB/DBURDICK/BoostGraph/Boost-Graph-1.4.tar.gz</action> <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action> <action type="shell_command">make</action> <action type="shell_command">make install</action> <action type="set_environment"> <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable> </action> </actions> </install> </package> </tool_dependency>