# HG changeset patch
# User big-tiandm
# Date 1414570782 14400
# Node ID a8c011dc575b033b65e59bbb2375754be617a9e1
# Parent  318617877a107346bef205982aedfc0e582a1552
Uploaded

diff -r 318617877a10 -r a8c011dc575b matching.pl
--- a/matching.pl	Wed Oct 29 04:19:04 2014 -0400
+++ b/matching.pl	Wed Oct 29 04:19:42 2014 -0400
@@ -39,7 +39,7 @@
 }
 
 ### genome mapping
-`bowtie -v $mis -f -p $threads -m $hits -a --best --strata $index $filein --al genome_mapped.fa --un genome_not_mapped.fa > genome_mapped.bwt`;
+`bowtie -v $mis -f -p $threads -m $hits -a --best --strata $index $filein --al genome_mapped.fa --un genome_not_mapped.fa > genome_mapped.bwt 2> run.log`;
 
 #`convert_bowtie_to_blast.pl  genome_mapped.bwt genome_mapped.fa $genome > genome_mapped.bst`;