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1 from setuptools import setup, find_packages
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2
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3 setup(
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4 name='cobraxy',
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5 version='0.1.0',
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6 description='A collection of tools for metabolic flux analysis in Galaxy.',
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7 long_description=open('README.md').read(),
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8 long_description_content_type='text/markdown',
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9 author='',
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10 author_email='',
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11 url='https://github.com/CompBtBs/COBRAxy.git',
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12 license='',
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13 packages=find_packages(include=["utils", "utils.*"]),
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14 py_modules=[
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15 'custom_data_generator',
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16 'flux_simulation',
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17 'flux_to_map',
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18 'marea_cluster',
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19 'marea',
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20 'ras_generator',
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21 'ras_to_bounds',
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22 'rps_generator'
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23 ],
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24 include_package_data=True,
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25 install_requires=[
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26 'cairosvg==2.7.1',
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27 'cobra==0.29.0',
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28 'joblib==1.4.2',
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29 'lxml==5.2.2',
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30 'matplotlib==3.7.3',
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31 'numpy==1.24.4',
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32 'pandas==2.0.3',
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33 'pyvips==2.2.3',
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34 'scikit-learn==1.3.2',
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35 'scipy==1.11',
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36 'seaborn==0.13.0',
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37 'svglib==1.5.1',
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38 'anndata==0.8.0',
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39 'pydeseq2==0.5.1'
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40 ],
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41 entry_points={
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42 'console_scripts': [
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43 'custom_data_generator=custom_data_generator:main',
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44 'flux_simulation=flux_simulation:main',
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45 'flux_to_map=flux_to_map:main',
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46 'marea_cluster=marea_cluster:main',
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47 'marea=marea:main',
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48 'ras_generator=ras_generator:main',
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49 'ras_to_bounds=ras_to_bounds:main',
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50 'rps_generator=rps_generator:main'
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51 ],
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52 },
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53 classifiers=[
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54 'Programming Language :: Python :: 3',
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55 'License :: OSI Approved :: MIT License',
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56 'Operating System :: OS Independent',
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57 ],
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58 python_requires='>=3.8.20,<3.12',
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59 )
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