Mercurial > repos > bimib > cobraxy

annotate COBRAxy/README.md @ 35:192b52da85d7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author luca_milaz
date Thu, 19 Sep 2024 10:03:06 +0000
parents aaad8c11b7d6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
41f35c2f0c7b Uploaded
luca_milaz
parents:
diff changeset
1 # Official repository for the COBRAxy toolset
41f35c2f0c7b Uploaded
luca_milaz
parents:
diff changeset
2 > COBRAxy (COBRApy in Galaxy) is a user-friendly tool that allows a user to user to characterize and to graphically compare simulated fluxomics coming from groups of samples with different transcriptional regulation of metabolism.
41f35c2f0c7b Uploaded
luca_milaz
parents:
diff changeset
3 It extends the MaREA 2 (Metabolic Reaction Enrichment Analysis) tool that enables users to compare groups in terms of RAS and RPS only. The tool is available as plug-in for the widely-used Galaxy platform for comparative genomics and bioinformatics analyses.
41f35c2f0c7b Uploaded
luca_milaz
parents:
diff changeset
4
41f35c2f0c7b Uploaded
luca_milaz
parents:
diff changeset
5 ## Useful links:
5
aaad8c11b7d6 Uploaded
luca_milaz
parents: 4
diff changeset
6 - COBRAxy Google Summer of Code 2024: https://summerofcode.withgoogle.com/programs/2024/projects/LSrCKfq7
aaad8c11b7d6 Uploaded
luca_milaz
parents: 4
diff changeset
7 - COBRApy: https://opencobra.github.io/cobrapy/
4
41f35c2f0c7b Uploaded
luca_milaz
parents:
diff changeset
8 - MaREA4Galaxy: https://galaxyproject.org/use/marea4galaxy/
41f35c2f0c7b Uploaded
luca_milaz
parents:
diff changeset
9 - Galaxy project: https://usegalaxy.org/
41f35c2f0c7b Uploaded
luca_milaz
parents:
diff changeset
10
41f35c2f0c7b Uploaded
luca_milaz
parents:
diff changeset
11 ## Documentation: