annotate COBRAxy/docs/tutorials/README.md @ 549:4c5fdcefce8e draft default tip

Uploaded
author francesco_lapi
date Wed, 29 Oct 2025 11:09:38 +0000
parents 73f2f7e2be17
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
492
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
1 # Tutorials
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
2
542
fcdbc81feb45 Uploaded
francesco_lapi
parents: 492
diff changeset
3 Learn COBRAxy through hands-on tutorials for web-based analysis.
492
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
4
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
5 ## Available Tutorials
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
6
547
73f2f7e2be17 Uploaded
francesco_lapi
parents: 542
diff changeset
7 | Tutorial | Description |
73f2f7e2be17 Uploaded
francesco_lapi
parents: 542
diff changeset
8 |----------|-------------|
73f2f7e2be17 Uploaded
francesco_lapi
parents: 542
diff changeset
9 | [Galaxy Setup](tutorials/galaxy-setup) | Set up Galaxy for web-based analysis |
73f2f7e2be17 Uploaded
francesco_lapi
parents: 542
diff changeset
10 | | |
73f2f7e2be17 Uploaded
francesco_lapi
parents: 542
diff changeset
11 | | |
492
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
12
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
13 ## Tutorial Data
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
14
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
15 Download example datasets used in tutorials:
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
16
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
17 ```bash
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
18 # Download tutorial data
547
73f2f7e2be17 Uploaded
francesco_lapi
parents: 542
diff changeset
19 wget https://github.com/CompBtBs/COBRAxy/blob/main/data_tutorial/data_tutorial.zip
492
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
20 unzip tutorial_data.zip
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
21 ```
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
22
547
73f2f7e2be17 Uploaded
francesco_lapi
parents: 542
diff changeset
23 The tutorial data includes Sample gene expression datasets (Cancer.txt and Normal.txt)
492
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
24
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
25 ## Getting Help
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
26
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
27 If you encounter issues during tutorials:
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
28
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
29 1. Check the specific tutorial's troubleshooting section
547
73f2f7e2be17 Uploaded
francesco_lapi
parents: 542
diff changeset
30 2. Refer to the main [Troubleshooting Guide](troubleshooting)
492
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
31
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
32 ## Contributing
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
33
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
34 Found an error or want to improve a tutorial?
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
35
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
36 - [Edit on GitHub](https://github.com/CompBtBs/COBRAxy/tree/main/docs/tutorials)
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
37 - [Report issues](https://github.com/CompBtBs/COBRAxy/issues)
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
38 - Suggest new tutorial topics
4ed95023af20 Uploaded
francesco_lapi
parents:
diff changeset
39
547
73f2f7e2be17 Uploaded
francesco_lapi
parents: 542
diff changeset
40 Ready to start? Pick your first tutorial above! 🚀