Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_generator.py @ 266:0025449eadba draft default tip

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Uploaded
author francesco_lapi
date Tue, 04 Mar 2025 15:32:37 +0000
parents bae18f67004c
children
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265:bae18f67004c 266:0025449eadba
226 226
227 if gene_dup: 227 if gene_dup:
228 if gene_custom == None: 228 if gene_custom == None:
229 229
230 if str(args.rules_selector) == 'HMRcore': 230 if str(args.rules_selector) == 'HMRcore':
231 print(1)
232 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/HMRcore_genes.p', 'rb')) 231 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/HMRcore_genes.p', 'rb'))
233 232
234 elif str(args.rules_selector) == 'Recon': 233 elif str(args.rules_selector) == 'Recon':
235 print(2)
236 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb')) 234 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb'))
237 235
238 elif str(args.rules_selector) == 'ENGRO2': 236 elif str(args.rules_selector) == 'ENGRO2':
239 print(3)
240 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb')) 237 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb'))
241 238
242 utils.logWarning(f"{args.tool_dir}'/local/pickle files/ENGRO2_genes.p'", ARGS.out_log) 239 utils.logWarning(f"{args.tool_dir}'/local/pickle files/ENGRO2_genes.p'", ARGS.out_log)
243 240
244 gene_in_rule = gene_in_rule.get(type_gene) 241 gene_in_rule = gene_in_rule.get(type_gene)