Mercurial > repos > bimib > cobraxy

comparison COBRAxy/marea_cluster.py @ 444:06564187fba3 draft

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Uploaded
author francesco_lapi
date Thu, 11 Sep 2025 09:03:10 +0000
parents 8cd0c70b0084
children
comparison
equal deleted inserted replaced
443:3d4e10546917 444:06564187fba3
505 global args 505 global args
506 args = process_args(args_in) 506 args = process_args(args_in)
507 507
508 if not os.path.exists(args.output_path): 508 if not os.path.exists(args.output_path):
509 os.makedirs(args.output_path) 509 os.makedirs(args.output_path)
510 510
511 #Data read 511 #Data read
512 512
513 X = read_dataset(args.input) 513 X = read_dataset(args.input)
514 X = X.iloc[:, 1:] 514 X = X.iloc[:, 1:]
515 X = pd.DataFrame.to_dict(X, orient='list') 515 X = pd.DataFrame.to_dict(X, orient='list')
518 518
519 for i in X.columns: 519 for i in X.columns:
520 if any(val is None or np.isnan(val) for val in X[i]): 520 if any(val is None or np.isnan(val) for val in X[i]):
521 X = X.drop(columns=[i]) 521 X = X.drop(columns=[i])
522 522
523 if args.scaling == True: 523 if args.scaling == "true":
524 list_to_remove = [] 524 list_to_remove = []
525 toll_std=1e-8 525 toll_std=1e-8
526 for i in X.columns: 526 for i in X.columns:
527 mean_i = X[i].mean() 527 mean_i = X[i].mean()
528 std_i = X[i].std() 528 std_i = X[i].std()