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comparison COBRAxy/rps_generator.xml @ 137:1226dedc2d7b draft

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Uploaded
author luca_milaz
date Sat, 26 Oct 2024 15:20:25 +0000
parents 41f35c2f0c7b
children 039362be6775
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136:44b36ae69353 137:1226dedc2d7b
22 #end if 22 #end if
23 ]]> 23 ]]>
24 </command> 24 </command>
25 <inputs> 25 <inputs>
26 <param name="input" argument="--input" type="data" format="tabular, tsv, csv" label="Abundance dataset:" /> 26 <param name="input" argument="--input" type="data" format="tabular, tsv, csv" label="Abundance dataset:" />
27 <param name="name" argument="--name" type="text" label="Dataset's name:" value="Dataset" help="Default: Dataset" /> 27 <param name="name" argument="--name" type="text" label="Dataset's name:" value="Dataset_RPS" help="Default: Dataset_RPS. Do not use white spaces." />
28 28
29 <conditional name="cond_reactions"> 29 <conditional name="cond_reactions">
30 <param name="reaction_choice" argument="--reaction_choice" type="select" label="Choose reaction dataset:"> 30 <param name="reaction_choice" argument="--reaction_choice" type="select" label="Choose reaction dataset:">
31 <option value="default" selected="true">ENGRO2 reaction dataset </option> 31 <option value="default" selected="true">ENGRO2 reaction dataset </option>
32 <option value="custom">Custom reaction dataset</option> 32 <option value="custom">Custom reaction dataset</option>
37 </conditional> 37 </conditional>
38 </inputs> 38 </inputs>
39 39
40 <outputs> 40 <outputs>
41 <data format="txt" name="log" label="Expression2RPS - $name - Log" /> 41 <data format="txt" name="log" label="Expression2RPS - $name - Log" />
42 <data format="tabular" name="rps_output" label="$name RPS"/> 42 <data format="tabular" name="rps_output" label="$name"/>
43 </outputs> 43 </outputs>
44 44
45 <help> 45 <help>
46 <![CDATA[ 46 <![CDATA[
47 47