Mercurial > repos > bimib > cobraxy

comparison COBRAxy/flux_simulation.xml @ 16:18b10d8c69bd draft

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Uploaded
author luca_milaz
date Wed, 18 Sep 2024 12:43:16 +0000
parents c10d8b38de84
children 609c72463b45
comparison
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15:88a649e1b5f4 16:18b10d8c69bd
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118 Output: 118 Output:
119 ------------- 119 -------------
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121 The tool generates: 121 The tool generates:
122 - Samples: reporting the sampled fluxes for each reaction (reaction names on the rows and sample names on the columns). Format: csv. 122 - Samples: reporting the sampled fluxes for each reaction (reaction names on the rows and sample names on the columns). Format: tab-separated.
123 - a log file (.txt). 123 - a log file (.txt).
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125 **TIP**: The Batches parameter is useful to mantain in memory just a batch of samples at time. For example, if you wish to sample 10.000 points, than it is suggested to select n_samples = 1.000 and n_batches=10. 125 **TIP**: The Batches parameter is useful to mantain in memory just a batch of samples at time. For example, if you wish to sample 10.000 points, than it is suggested to select n_samples = 1.000 and n_batches=10.
126 **TIP**: The Thinning parameter of the OPTGP algorithm is useful to converge to a stationary distribution (see cited articles by Galuzzi, Milazzo and Damiani). 126 **TIP**: The Thinning parameter of the OPTGP algorithm is useful to converge to a stationary distribution (see cited articles by Galuzzi, Milazzo and Damiani).
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