Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_generator.py @ 261:1df2d8de156f draft

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Uploaded
author francesco_lapi
date Tue, 04 Mar 2025 15:19:45 +0000
parents 70b2bff188dd
children f7716d7d7e35
comparison
equal deleted inserted replaced
260:70b2bff188dd 261:1df2d8de156f
226 226
227 if gene_dup: 227 if gene_dup:
228 if gene_custom == None: 228 if gene_custom == None:
229 229
230 if args.rules_selector == 'HMRcore': 230 if args.rules_selector == 'HMRcore':
231 print(1)
231 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/HMRcore_genes.p', 'rb')) 232 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/HMRcore_genes.p', 'rb'))
232 233
233 elif args.rules_selector == 'Recon': 234 elif args.rules_selector == 'Recon':
235 print(2)
234 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb')) 236 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb'))
235 237
236 elif args.rules_selector == 'ENGRO2': 238 elif args.rules_selector == 'ENGRO2':
239 print(3)
237 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb')) 240 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb'))
238 241
239 utils.logWarning(f"{args.tool_dir}'/local/pickle files/ENGRO2_genes.p'", ARGS.out_log) 242 utils.logWarning(f"{args.tool_dir}'/local/pickle files/ENGRO2_genes.p'", ARGS.out_log)
240 243
241 gene_in_rule = gene_in_rule.get(type_gene) 244 gene_in_rule = gene_in_rule.get(type_gene)
242 245
243 else: 246 else: