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comparison COBRAxy/marea_cluster.py @ 155:3ad3fb730b87 draft

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author bimib
date Thu, 07 Nov 2024 10:22:56 +0000
parents 49fb0556242f
children 4a677fc67aeb
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154:49fb0556242f 155:3ad3fb730b87
18 import scipy.cluster.hierarchy as shc 18 import scipy.cluster.hierarchy as shc
19 import matplotlib.cm as cm 19 import matplotlib.cm as cm
20 from typing import Optional, Dict, List 20 from typing import Optional, Dict, List
21 21
22 ################################# process args ############################### 22 ################################# process args ###############################
23 def process_args(args :List[str] = None) -> argparse.Namespace: 23 def process_args(args_in :List[str] = None) -> argparse.Namespace:
24 """ 24 """
25 Processes command-line arguments. 25 Processes command-line arguments.
26 26
27 Args: 27 Args:
28 args (list): List of command-line arguments. 28 args (list): List of command-line arguments.
90 '-idop', '--output_path', 90 '-idop', '--output_path',
91 type = str, 91 type = str,
92 default='result', 92 default='result',
93 help = 'output path for maps') 93 help = 'output path for maps')
94 94
95 args = parser.parse_args(args) 95 args_in = parser.parse_args(args_in)
96 return args 96 return args_in
97 97
98 ########################### warning ########################################### 98 ########################### warning ###########################################
99 def warning(s :str) -> None: 99 def warning(s :str) -> None:
100 """ 100 """
101 Log a warning message to an output log file and print it to the console. 101 Log a warning message to an output log file and print it to the console.