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comparison COBRAxy/rps_generator.py @ 326:3dccdf56cb24 draft

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author francesco_lapi
date Mon, 30 Jun 2025 11:07:55 +0000
parents 7b8d9de81a86
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325:2aea7e27ae0f 326:3dccdf56cb24
169 dict: A dictionary containing Reaction Propensity Scores (RPS) where keys are reaction names and values are the corresponding RPS scores. 169 dict: A dictionary containing Reaction Propensity Scores (RPS) where keys are reaction names and values are the corresponding RPS scores.
170 """ 170 """
171 rps_scores = {} 171 rps_scores = {}
172 172
173 for reaction_name, substrates in reactions.items(): 173 for reaction_name, substrates in reactions.items():
174 total_contribution = 1 174 total_contribution = 0
175 metab_significant = False 175 metab_significant = False
176 for metabolite, stoichiometry in substrates.items(): 176 for metabolite, stoichiometry in substrates.items():
177 abundance = 1 if math.isnan(abundances[metabolite]) else abundances[metabolite] 177 abundance = 1 if math.isnan(abundances[metabolite]) else abundances[metabolite]
178 if metabolite not in black_list and metabolite not in missing_list: 178 if metabolite not in black_list and metabolite not in missing_list:
179 metab_significant = True 179 metab_significant = True