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comparison COBRAxy/ras_generator.xml @ 136:44b36ae69353 draft

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Uploaded
author luca_milaz
date Sat, 26 Oct 2024 15:17:42 +0000
parents ad35ed011bd1
children ea9175172935
comparison
equal deleted inserted replaced
135:ad35ed011bd1 136:44b36ae69353
20 --ras_output $ras_output 20 --ras_output $ras_output
21 #if $cond_rule.rules_selector == 'Custom' 21 #if $cond_rule.rules_selector == 'Custom'
22 --rule_list $rule_list 22 --rule_list $rule_list
23 --rules_name $rule_list.element_identifier 23 --rules_name $rule_list.element_identifier
24 #end if 24 #end if
25
25 ]]> 26 ]]>
26 </command> 27 </command>
27 <inputs> 28 <inputs>
28 <conditional name="cond_rule"> 29 <conditional name="cond_rule">
29 <expand macro="options"/> 30 <expand macro="options"/>
30 <when value="Custom"> 31 <when value="Custom">
31 <param name="rule_list" argument="--rule_list" type="data" format="tabular, csv, pickle, p, pk" label="Custom rules" /> 32 <param name="rule_list" argument="--rule_list" type="data" format="tabular, csv, pickle, p, pk" label="Custom rules" />
32 </when> 33 </when>
33 </conditional> 34 </conditional>
34 <param name="input" argument="--input" type="data" format="tabular, csv, tsv" label="Gene Expression dataset:" /> 35 <param name="input" argument="--input" type="data" format="tabular, csv, tsv" label="Gene Expression dataset:" />
35 <param name="name" argument="--name" type="text" label="Dataset's name:" value="Dataset" help="Default: Dataset. Do not use white spaces." /> 36 <param name="name" argument="--name" type="text" label="Dataset's name:" value="Dataset_RAS" help="Default: Dataset. Do not use white spaces." />
36 <param name="none" argument="--none" type="boolean" checked="true" label="(A and NaN) solved as (A)?" /> 37 <param name="none" argument="--none" type="boolean" checked="true" label="(A and NaN) solved as (A)?" />
37 </inputs> 38 </inputs>
38 39
39 <outputs> 40 <outputs>
40 <data format="txt" name="log" label="Expression2RAS - $name - Log" /> 41 <data format="txt" name="log" label="Expression2RAS - $name - Log" />