Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_generator.py @ 258:466172709d68 draft

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Uploaded
author francesco_lapi
date Tue, 04 Mar 2025 15:05:13 +0000
parents bb4e43663c69
children 91ad9bf5a734
comparison
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257:bb4e43663c69 258:466172709d68
219 219
220 gene_dup = [item for item, count in 220 gene_dup = [item for item, count in
221 collections.Counter(gene[gene.columns[0]]).items() if count > 1] 221 collections.Counter(gene[gene.columns[0]]).items() if count > 1]
222 pat_dup = [item for item, count in 222 pat_dup = [item for item, count in
223 collections.Counter(list(gene.columns)).items() if count > 1] 223 collections.Counter(list(gene.columns)).items() if count > 1]
224 224 gene_in_rule = None
225 if gene_dup: 225 if gene_dup:
226 if gene_custom == None: 226 if gene_custom == None:
227 if args.rules_selector == 'HMRcore': 227 if args.rules_selector == 'HMRcore':
228 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/HMRcore_genes.p', 'rb')) 228 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/HMRcore_genes.p', 'rb'))
229 229