Mercurial > repos > bimib > cobraxy

comparison COBRAxy/flux_to_map.py @ 235:5c70439f2907 draft

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Uploaded
author luca_milaz
date Tue, 17 Dec 2024 11:09:55 +0000
parents e71edb2585e6
children
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234:e71edb2585e6 235:5c70439f2907
806 num += 1 806 num += 1
807 807
808 elif ARGS.option == "dataset_class": 808 elif ARGS.option == "dataset_class":
809 classes = read_dataset(classPath, "class") 809 classes = read_dataset(classPath, "class")
810 classes = classes.astype(str) 810 classes = classes.astype(str)
811 resolve_rules_float, ids = getDatasetValues(datasetPath, "Dataset Class (not actual name)")
811 #check if classes have mathc on ids 812 #check if classes have mathc on ids
812 if not all(classes.iloc[:, 0].isin(ids)): 813 if not all(classes.iloc[:, 0].isin(ids)):
813 utils.logWarning( 814 utils.logWarning(
814 "No match between classes and sample IDs", ARGS.out_log) 815 "No match between classes and sample IDs", ARGS.out_log)
815 resolve_rules_float, ids = getDatasetValues(datasetPath, "Dataset Class (not actual name)")
816 if resolve_rules_float != None: class_pat = split_class(classes, resolve_rules_float) 816 if resolve_rules_float != None: class_pat = split_class(classes, resolve_rules_float)
817 817
818 return ids, class_pat 818 return ids, class_pat
819 #^^^ TODO: this could be a match statement over an enum, make it happen future marea dev with python 3.12! (it's why I kept the ifs) 819 #^^^ TODO: this could be a match statement over an enum, make it happen future marea dev with python 3.12! (it's why I kept the ifs)
820 820