Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_to_bounds.py @ 124:67a79e4f037a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author luca_milaz
date Mon, 14 Oct 2024 08:36:56 +0000
parents 258ff4208e52
children a9825d06cc43
comparison
equal deleted inserted replaced
123:258ff4208e52 124:67a79e4f037a
171 171
172 Returns: 172 Returns:
173 pd.DataFrame: DataFrame containing the bounds of reactions in the model. 173 pd.DataFrame: DataFrame containing the bounds of reactions in the model.
174 """ 174 """
175 rxns_ids = [rxn.id for rxn in model.reactions] 175 rxns_ids = [rxn.id for rxn in model.reactions]
176
177 #metto a zero medium engro2
178 for rxn_id, _ in model.medium:
179 model.reactions.get_by_id(rxn_id).lower_bound = float(0.0)
176 180
177 # Set medium conditions 181 # Set medium conditions
178 for reaction, value in medium.items(): 182 for reaction, value in medium.items():
179 if value is not None: 183 if value is not None:
180 ## SOLO ENGRO2 184 ## SOLO ENGRO2