cobraxy: COBRAxy/utils/general

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equal deleted inserted replaced

-:f413b78d61bf
+:71850bdf9e1e
 from itertools import count
 from typing import Any, Callable, Dict, Generic, List, Literal, Optional, TypeVar, Union, Set, Tuple
 import pandas as pd
 import cobra
-from cobra import Model, Reaction, Metabolite
+from cobra import Model as cobraModel, Reaction, Metabolite
 import zipfile
 import gzip
 import bz2
 from io import StringIO
 rename_genes(model2,dict_genes)
 return model2
-def build_cobra_model_from_csv(csv_path: str, model_id: str = "ENGRO2_custom") -> cobra.Model:
+def build_cobra_model_from_csv(csv_path: str, model_id: str = "new_model") -> cobra.Model:
 """
 Costruisce un modello COBRApy a partire da un file CSV con i dati delle reazioni.
 Args:
 csv_path: Path al file CSV (separato da tab)
 # Leggi i dati dal CSV
 df = pd.read_csv(csv_path, sep='\t')
 # Crea il modello vuoto
-model = Model(model_id)
+model = cobraModel(model_id)
 # Dict per tenere traccia di metaboliti e compartimenti
 metabolites_dict = {}
 compartments_dict = {}

Mercurial > repos > bimib > cobraxy