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comparison COBRAxy/ras_to_bounds.xml @ 17:7e1d2b5df5cb draft

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author luca_milaz
date Wed, 18 Sep 2024 12:44:35 +0000
parents 88a649e1b5f4
children e962ba5fc27d
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16:18b10d8c69bd 17:7e1d2b5df5cb
84 - RAS matrix: tab-separated RAS file as returned by RAS generator. 84 - RAS matrix: tab-separated RAS file as returned by RAS generator.
85 - Medium: tab-separated file containing lower and upper-bounds of medium reactions. 85 - Medium: tab-separated file containing lower and upper-bounds of medium reactions.
86 86
87 Example of custum growth medium file: 87 Example of custum growth medium file:
88 88
89
89 +------------+----------------+----------------+ 90 +------------+----------------+----------------+
90 | Reaction ID| lower_bound | upper_bound | 91 | Reaction ID| lower_bound | upper_bound |
91 +============+================+================+ 92 +============+================+================+
92 | r1 | 0.123167 | 0.371355 | 93 | r1 | 0.123167 | 0.371355 |
93 +------------+----------------+----------------+ 94 +------------+----------------+----------------+
94 | r2 | 0.268765 | 0.765567 | 95 | r2 | 0.268765 | 0.765567 |
95 +------------+----------------+----------------+ 96 +------------+----------------+----------------+