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comparison COBRAxy/ras_to_bounds.xml @ 79:9df36ff21790 draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 10:48:57 +0000
parents 3321ab15610c
children c38d1d50418b
comparison
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78:3321ab15610c 79:9df36ff21790
88 Accepted files: 88 Accepted files:
89 - A model: JSON or XML file reporting reactions and rules contained in the model. 89 - A model: JSON or XML file reporting reactions and rules contained in the model.
90 - RAS matrix: tab-separated RAS file as returned by RAS generator. Multiple RAS files can be uploaded too (e.g. one RAS matrix for normal cells and one for cancer cells). Note that if multiple RAs matrices are uploaded, the bounds are normalzed across all cells. 90 - RAS matrix: tab-separated RAS file as returned by RAS generator. Multiple RAS files can be uploaded too (e.g. one RAS matrix for normal cells and one for cancer cells). Note that if multiple RAs matrices are uploaded, the bounds are normalzed across all cells.
91 - Medium: tab-separated file containing lower and upper-bounds of medium reactions. 91 - Medium: tab-separated file containing lower and upper-bounds of medium reactions.
92 92
93 Example of custum growth medium file: 93 Example of custum growth medium fileeeee:
94 94
95 95
96 +------------+----------------+----------------+ 96 +------------+----------------+----------------+
97 | Reaction ID| lower_bound | upper_bound | 97 | Reaction ID| lower_bound | upper_bound |
98 +============+================+================+ 98 +============+================+================+