Mercurial > repos > bimib > cobraxy

comparison COBRAxy/flux_to_map.xml @ 166:a057458bfa4e draft

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Uploaded
author luca_milaz
date Mon, 18 Nov 2024 17:22:33 +0000
parents 2be342a25cdb
children eefe693b2fdd
comparison
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165:2be342a25cdb 166:a057458bfa4e
152 152
153 Optional files: 153 Optional files:
154 - custom svg map. Graphical elements must have the same IDs of reactions. See HmrCore svg map for an example. 154 - custom svg map. Graphical elements must have the same IDs of reactions. See HmrCore svg map for an example.
155 155
156 The tool generates: 156 The tool generates:
157 - 1) a tab-separated file: reporting fold-change and p-values of fluxes between a pair of conditions/classes; 157 - A tab-separated file: reporting fold-change and p-values of fluxes between a pair of conditions/classes;
158 - 2) a metabolic map file (downloadable as .svg and .png): visualizing up- and down-regulated reactions between a pair of conditions/classes; 158 - A metabolic map file (downloadable as .svg and .png): visualizing up- and down-regulated reactions between a pair of conditions/classes;
159 - 3) two metabolic maps to visualize the mean and median fluxes normalized amongst all classes. The associated color map is also generated; 159 - Two metabolic maps to visualize the mean and median fluxes normalized amongst all classes. The associated color map is also generated;
160 - 4) a log file (.txt). 160 - A log file (.txt).
161 161
162 Output options: 162 Output options:
163 - To calculate P-Values and Fold-Changes and to enrich maps, comparisons are performed for each possible pair of groups (default option ‘One vs One’). 163 - To calculate P-Values and Fold-Changes and to enrich maps, comparisons are performed for each possible pair of groups (default option ‘One vs One’).
164 164
165 Alternative options are: 165 Alternative options are: