Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_generator.py @ 41:a1ab05a70185 draft

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author bimib
date Tue, 08 Oct 2024 16:39:55 +0000
parents 41f35c2f0c7b
children ec7d0f8d34e4
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40:353900710405 41:a1ab05a70185
229 elif args.rules_selector == 'Recon': 229 elif args.rules_selector == 'Recon':
230 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb')) 230 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb'))
231 231
232 elif args.rules_selector == 'ENGRO2': 232 elif args.rules_selector == 'ENGRO2':
233 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb')) 233 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb'))
234 234 print(gene_in_rule)
235 print(type_gene)
235 gene_in_rule = gene_in_rule.get(type_gene) 236 gene_in_rule = gene_in_rule.get(type_gene)
236 237
237 else: 238 else:
238 gene_in_rule = gene_custom 239 gene_in_rule = gene_custom
239 tmp = [] 240 tmp = []