Mercurial > repos > bimib > cobraxy
comparison COBRAxy/README.md @ 5:aaad8c11b7d6 draft
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| author | luca_milaz |
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| date | Wed, 18 Sep 2024 11:02:44 +0000 |
| parents | 41f35c2f0c7b |
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| 1 # Official repository for the COBRAxy toolset | 1 # Official repository for the COBRAxy toolset |
| 2 > COBRAxy (COBRApy in Galaxy) is a user-friendly tool that allows a user to user to characterize and to graphically compare simulated fluxomics coming from groups of samples with different transcriptional regulation of metabolism. | 2 > COBRAxy (COBRApy in Galaxy) is a user-friendly tool that allows a user to user to characterize and to graphically compare simulated fluxomics coming from groups of samples with different transcriptional regulation of metabolism. |
| 3 It extends the MaREA 2 (Metabolic Reaction Enrichment Analysis) tool that enables users to compare groups in terms of RAS and RPS only. The tool is available as plug-in for the widely-used Galaxy platform for comparative genomics and bioinformatics analyses. | 3 It extends the MaREA 2 (Metabolic Reaction Enrichment Analysis) tool that enables users to compare groups in terms of RAS and RPS only. The tool is available as plug-in for the widely-used Galaxy platform for comparative genomics and bioinformatics analyses. |
| 4 | 4 |
| 5 ## Useful links: | 5 ## Useful links: |
| 6 - Google Summer of Code 2024: https://summerofcode.withgoogle.com/programs/2024/projects/LSrCKfq7 | 6 - COBRAxy Google Summer of Code 2024: https://summerofcode.withgoogle.com/programs/2024/projects/LSrCKfq7 |
| 7 - COBRApy: https://opencobra.github.io/cobrapy/ | |
| 7 - MaREA4Galaxy: https://galaxyproject.org/use/marea4galaxy/ | 8 - MaREA4Galaxy: https://galaxyproject.org/use/marea4galaxy/ |
| 8 - Galaxy project: https://usegalaxy.org/ | 9 - Galaxy project: https://usegalaxy.org/ |
| 9 | 10 |
| 10 ## Documentation: | 11 ## Documentation: |