Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_to_bounds.py @ 109:ba10ad78fc5f draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 15:37:33 +0000
parents 22cebbdb4b6d
children 76e87d3b9e0e
comparison
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108:22cebbdb4b6d 109:ba10ad78fc5f
264 df_mediums = pd.read_csv(ARGS.tool_dir + "/local/medium/medium.csv", index_col = 0) 264 df_mediums = pd.read_csv(ARGS.tool_dir + "/local/medium/medium.csv", index_col = 0)
265 ARGS.medium_selector = ARGS.medium_selector.replace("_", " ") 265 ARGS.medium_selector = ARGS.medium_selector.replace("_", " ")
266 medium = df_mediums[[ARGS.medium_selector]] 266 medium = df_mediums[[ARGS.medium_selector]]
267 medium = medium[ARGS.medium_selector].to_dict() 267 medium = medium[ARGS.medium_selector].to_dict()
268 268
269 warning(str(medium))
270
269 if(ARGS.ras_selector == True): 271 if(ARGS.ras_selector == True):
270 generate_bounds(model, medium, ras = ras_combined, output_folder=ARGS.output_folder) 272 generate_bounds(model, medium, ras = ras_combined, output_folder=ARGS.output_folder)
271 class_assignments.to_csv(ARGS.cell_class, sep = '\t', index = False) 273 class_assignments.to_csv(ARGS.cell_class, sep = '\t', index = False)
272 else: 274 else:
273 generate_bounds(model, medium, output_folder=ARGS.output_folder) 275 generate_bounds(model, medium, output_folder=ARGS.output_folder)