Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_generator.py @ 257:bb4e43663c69 draft

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Uploaded
author francesco_lapi
date Tue, 04 Mar 2025 15:03:07 +0000
parents 75804fbc338b
children 466172709d68
comparison
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256:75804fbc338b 257:bb4e43663c69
230 elif args.rules_selector == 'Recon': 230 elif args.rules_selector == 'Recon':
231 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb')) 231 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb'))
232 232
233 elif args.rules_selector == 'ENGRO2': 233 elif args.rules_selector == 'ENGRO2':
234 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb')) 234 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb'))
235 print(pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb')))
235 print(gene_in_rule) 236 print(gene_in_rule)
236 print(f"{args.tool_dir}'/local/pickle files/ENGRO2_genes.p'") 237 print(f"{args.tool_dir}/local/pickle files/ENGRO2_genes.p")
237 utils.logWarning(f"{args.tool_dir}'/local/pickle files/ENGRO2_genes.p'", ARGS.out_log) 238 utils.logWarning(f"{args.tool_dir}'/local/pickle files/ENGRO2_genes.p'", ARGS.out_log)
238 print(args.rules_selector) 239 print(args.rules_selector)
239 gene_in_rule = gene_in_rule.get(type_gene) 240 gene_in_rule = gene_in_rule.get(type_gene)
240 241
241 else: 242 else: