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comparison COBRAxy/custom_data_generator.xml @ 24:c5dbdbb64cef draft

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Uploaded
author luca_milaz
date Thu, 19 Sep 2024 08:03:37 +0000
parents deb6d3439342
children b61fc7f1b6ab
comparison
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23:20c30b1a032d 24:c5dbdbb64cef
14 <command detect_errors="exit_code"> 14 <command detect_errors="exit_code">
15 <![CDATA[ 15 <![CDATA[
16 python $__tool_directory__/custom_data_generator.py 16 python $__tool_directory__/custom_data_generator.py
17 --input $input 17 --input $input
18 --name $input.element_identifier 18 --name $input.element_identifier
19 --output_format $output_format
20 --out_log $log 19 --out_log $log
20 --out_rules $rules
21 --out_reactions $reactions
22 --out_bounds $bounds
23 --out_medium $medium
21 ]]> 24 ]]>
22 </command> 25 </command>
23 <inputs> 26 <inputs>
24 <param name="input" argument="--input" type="data" format="xml, json" label="Custom model:" /> 27 <param name="input" argument="--input" type="data" format="xml, json" label="Custom model:" />
25 <param name="name" argument="--name" type="text" label="Model's name:" value="Model" help="Default: Model" /> 28 <param name="name" argument="--name" type="text" label="Model's name:" value="Model" help="Default: Model" />
26
27 <param name="output_format" argument="--output_format" type="select" label="Output files format:">
28 <option value="p" selected="true">pickle extension (binary, non-editable, pre-parsed)</option>
29 <option value="csv">Comma Separated Values (csv text file, editable, raw)</option>
30 </param>
31 </inputs> 29 </inputs>
32 30
33 <outputs> 31 <outputs>
34 <data format="txt" name="log" label="CustomDataGenerator - $name - Log" /> 32 <data format="txt" name="log" label="${tool.name} - Log" />
35 33 <data format="tabular" name="rules" label="${tool.name} - rules" />
36 <collection name="results" type="list" label="Custom Data Results ($output_format)"> 34 <data format="tabular" name="reactions" label="${tool.name} - reactions" />
37 <discover_datasets name = "collection" pattern="__name_and_ext__" directory="result"/> 35 <data format="tabular" name="bounds" label="${tool.name} - bounds" />
38 </collection> 36 <data format="tabular" name="medium" label="${tool.name} - medium" />
39 </outputs> 37 </outputs>
40 38
41 <help> 39 <help>
42 <![CDATA[ 40 <![CDATA[
43 What it does 41 What it does