Mercurial > repos > bimib > cobraxy

comparison COBRAxy/flux_simulation.py @ 517:c66aa96336d3 draft

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Uploaded
author luca_milaz
date Thu, 09 Oct 2025 10:00:03 +0000
parents ded8a0d6cb6d
children 8f65bed8d4cc
comparison
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516:7726a4a7173f 517:c66aa96336d3
117 default='flux_simulation/', 117 default='flux_simulation/',
118 help = 'output path for fluxes') 118 help = 'output path for fluxes')
119 119
120 parser.add_argument('-otm', '--out_mean', 120 parser.add_argument('-otm', '--out_mean',
121 type = str, 121 type = str,
122 required=False,
122 help = 'output of mean of fluxes') 123 help = 'output of mean of fluxes')
123 124
124 parser.add_argument('-otmd', '--out_median', 125 parser.add_argument('-otmd', '--out_median',
125 type = str, 126 type = str,
127 required=False,
126 help = 'output of median of fluxes') 128 help = 'output of median of fluxes')
127 129
128 parser.add_argument('-otq', '--out_quantiles', 130 parser.add_argument('-otq', '--out_quantiles',
129 type = str, 131 type = str,
132 required=False,
130 help = 'output of quantiles of fluxes') 133 help = 'output of quantiles of fluxes')
131 134
132 parser.add_argument('-otf', '--out_fluxes', 135 parser.add_argument('-otf', '--out_fluxes',
133 type = str, 136 type = str,
137 required=False,
134 help = 'output of fluxes') 138 help = 'output of fluxes')
135 parser.add_argument('-otfva', '--out_fva', 139 parser.add_argument('-otfva', '--out_fva',
136 type = str, 140 type = str,
141 required=False,
137 help = 'output of FVA results') 142 help = 'output of FVA results')
138 parser.add_argument('-otp', '--out_pfba', 143 parser.add_argument('-otp', '--out_pfba',
139 type = str, 144 type = str,
145 required=False,
140 help = 'output of pFBA results') 146 help = 'output of pFBA results')
141 parser.add_argument('-ots', '--out_sensitivity', 147 parser.add_argument('-ots', '--out_sensitivity',
142 type = str, 148 type = str,
149 required=False,
143 help = 'output of sensitivity results') 150 help = 'output of sensitivity results')
144 ARGS = parser.parse_args(args) 151 ARGS = parser.parse_args(args)
145 return ARGS 152 return ARGS
146 ########################### warning ########################################### 153 ########################### warning ###########################################
147 def warning(s :str) -> None: 154 def warning(s :str) -> None: