Mercurial > repos > bimib > cobraxy

comparison COBRAxy/flux_to_map.py @ 274:d54d6728b204 draft

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Uploaded
author francesco_lapi
date Mon, 05 May 2025 10:15:46 +0000
parents 32d015071c5c
children e87aeb3a33cd
comparison
equal deleted inserted replaced
273:99703bcaa290 274:d54d6728b204
724 try: 724 try:
725 p_value, z_score = computePValue(l1, l2) 725 p_value, z_score = computePValue(l1, l2)
726 avg1 = sum(l1) / len(l1) 726 avg1 = sum(l1) / len(l1)
727 avg2 = sum(l2) / len(l2) 727 avg2 = sum(l2) / len(l2)
728 f_c = fold_change(avg1, avg2) 728 f_c = fold_change(avg1, avg2)
729 if math.isnan(p_value) or (isinstance(f_c, float) and math.isnan(f_c)): continue
729 if not isinstance(z_score, str) and max_z_score < abs(z_score): max_z_score = abs(z_score) 730 if not isinstance(z_score, str) and max_z_score < abs(z_score): max_z_score = abs(z_score)
730 731
731 tmp[reactId] = [float(p_value), f_c, z_score, avg1, avg2] 732 tmp[reactId] = [float(p_value), f_c, z_score, avg1, avg2]
732 except (TypeError, ZeroDivisionError): continue 733 except (TypeError, ZeroDivisionError): continue
733 734