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1 # Tutorials 1 # Tutorials
2 2
3 Learn COBRAxy through hands-on tutorials for web-based analysis. 3 Learn COBRAxy through hands-on tutorials for web-based analysis.
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5 ## Available Tutorials 5 To set up Galaxy and start using it for web-based analyses, see the [Galaxy Setup](tutorials/galaxy-setup)
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7 ## Available Workflows
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9 This is a collection of GALAXY workflows illustrating different applications of the tool.
10 The general repository is at the following link: [Galaxy workflows](http://marea4galaxy.cloud.ba.infn.it/galaxy/workflows/list_published).
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12 To use a workflow, click the "Import" button, and it will be added to your personal workflow page.
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7 | Tutorial | Description | 14 | Tutorial | Description |
8 |----------|-------------| 15 |----------|-------------|
9 | [Galaxy Setup](tutorials/galaxy-setup) | Set up Galaxy for web-based analysis | 16 |[Flux Enrichment Analysis - separated datasets](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=a64417ff266b740e) | Creation of maps of the fluxes differently expressed between two conditions. One gene expression dataset different for each condition. |
10 | | | 17 | [Flux Enrichment Analysis (sampling mean) - separated datasets](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=16e792953f5b45db) | Creation of maps of the fluxes differently expressed between two conditions. One gene expression dataset different for each condition. |
11 | | | 18 | [Flux clustering (sampling mean) + Flux Enrichment Analys](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=c851ab275e52f8af) | Creation of maps of the fluxes, using one dataset differently expressed for each condition and its sample group specification|
19 | [Flux Enrichment Analysis (pFBA) - separated datasets](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=bf0806da5b28c6d9) | Creation of maps of the fluxes differently expressed between two conditions. One gene expression dataset different for each condition. |
20 | [Flux clustering (pFBA) + Flux Enrichment Analysis](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=be0a27b9edd0db03) | Creation of maps of the fluxes, using one dataset differently expressed for each condition and its sample group specification |
21 | [RAS clustering + Reaction Enrichment Analysis](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=81991b32733a4fc4) | Creation of RAS maps, one single expression gene dataset and its sample group specification |
22 | [Reaction Enrichment Analysis - unified datasets](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=0d16186aaff7cbfd) |Creation of RAS maps starting from an expression dataset and its corresponding classes. One gene expression dataset as input and its classes to compare. |
23 | [Reaction Enrichment Analysis - separated datasets](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=290670ee50ab85f0) | Creation of RAS maps using the tool MaREA. Confrontation of two datasets that must be different from one another. |
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25 A more detailed description of the tools is available on the corresponding GALAXY page.
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13 ## Tutorial Data 27 ## Tutorial Data
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15 Download example datasets used in tutorials: 29 Download example datasets used in tutorials:
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