Mercurial > repos > bimib > cobraxy

comparison COBRAxy/flux_to_map.py @ 199:df664d1a86d4 draft

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Uploaded
author francesco_lapi
date Thu, 21 Nov 2024 11:18:06 +0000
parents 1dda40a60037
children 4e368ecd4fb6
comparison
equal deleted inserted replaced
198:1dda40a60037 199:df664d1a86d4
663 if sizeMismatch > 0: row.extend([FIELD_NOT_AVAILABLE] * sizeMismatch) 663 if sizeMismatch > 0: row.extend([FIELD_NOT_AVAILABLE] * sizeMismatch)
664 writer.writerow({ field : data for field, data in zip(fieldNames, row) }) 664 writer.writerow({ field : data for field, data in zip(fieldNames, row) })
665 665
666 OldEnrichedScores = Dict[str, List[Union[float, FoldChange]]] #TODO: try to use Tuple whenever possible 666 OldEnrichedScores = Dict[str, List[Union[float, FoldChange]]] #TODO: try to use Tuple whenever possible
667 def writeTabularResult(enrichedScores : OldEnrichedScores, outPath :utils.FilePath) -> None: 667 def writeTabularResult(enrichedScores : OldEnrichedScores, outPath :utils.FilePath) -> None:
668 fieldNames = ["ids", "P_Value", "fold change"] 668 fieldNames = ["ids", "P_Value", "fold change", "z-score"]
669 fieldNames.extend(["average_1", "average_2"]) 669 fieldNames.extend(["average_1", "average_2"])
670 670
671 writeToCsv([ [reactId] + values for reactId, values in enrichedScores.items() ], fieldNames, outPath) 671 writeToCsv([ [reactId] + values for reactId, values in enrichedScores.items() ], fieldNames, outPath)
672 672
673 def temp_thingsInCommon(tmp :Dict[str, List[Union[float, FoldChange]]], core_map :ET.ElementTree, max_z_score :float, dataset1Name :str, dataset2Name = "rest") -> None: 673 def temp_thingsInCommon(tmp :Dict[str, List[Union[float, FoldChange]]], core_map :ET.ElementTree, max_z_score :float, dataset1Name :str, dataset2Name = "rest") -> None: