Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_to_bounds.py @ 105:e3b3958c0d88 draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 13:47:24 +0000
parents d4d84b2bce9b
children 1629671d4ca6
comparison
equal deleted inserted replaced
104:d4d84b2bce9b 105:e3b3958c0d88
152 152
153 Returns: 153 Returns:
154 None 154 None
155 """ 155 """
156 model_new = model.copy() 156 model_new = model.copy()
157 warning(str(ras_row.index))
158 apply_ras_bounds(model_new, ras_row, rxns_ids) 157 apply_ras_bounds(model_new, ras_row, rxns_ids)
159 bounds = pd.DataFrame([(rxn.lower_bound, rxn.upper_bound) for rxn in model_new.reactions], index=rxns_ids, columns=["lower_bound", "upper_bound"]) 158 bounds = pd.DataFrame([(rxn.lower_bound, rxn.upper_bound) for rxn in model_new.reactions], index=rxns_ids, columns=["lower_bound", "upper_bound"])
160 bounds.to_csv(output_folder + cellName + ".csv", sep='\t', index=True) 159 bounds.to_csv(output_folder + cellName + ".csv", sep='\t', index=True)
161 pass 160 pass
162 161