Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_generator.xml @ 138:ea9175172935 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author luca_milaz
date Sat, 26 Oct 2024 15:20:34 +0000
parents 44b36ae69353
children 1b5c8b6defca
comparison
equal deleted inserted replaced
137:1226dedc2d7b 138:ea9175172935
20 --ras_output $ras_output 20 --ras_output $ras_output
21 #if $cond_rule.rules_selector == 'Custom' 21 #if $cond_rule.rules_selector == 'Custom'
22 --rule_list $rule_list 22 --rule_list $rule_list
23 --rules_name $rule_list.element_identifier 23 --rules_name $rule_list.element_identifier
24 #end if 24 #end if
25
26 ]]> 25 ]]>
27 </command> 26 </command>
28 <inputs> 27 <inputs>
29 <conditional name="cond_rule"> 28 <conditional name="cond_rule">
30 <expand macro="options"/> 29 <expand macro="options"/>
31 <when value="Custom"> 30 <when value="Custom">
32 <param name="rule_list" argument="--rule_list" type="data" format="tabular, csv, pickle, p, pk" label="Custom rules" /> 31 <param name="rule_list" argument="--rule_list" type="data" format="tabular, csv, pickle, p, pk" label="Custom rules" />
33 </when> 32 </when>
34 </conditional> 33 </conditional>
35 <param name="input" argument="--input" type="data" format="tabular, csv, tsv" label="Gene Expression dataset:" /> 34 <param name="input" argument="--input" type="data" format="tabular, csv, tsv" label="Gene Expression dataset:" />
36 <param name="name" argument="--name" type="text" label="Dataset's name:" value="Dataset_RAS" help="Default: Dataset. Do not use white spaces." /> 35 <param name="name" argument="--name" type="text" label="Dataset's name:" value="Dataset_RAS" help="Default: Dataset_RAS. Do not use white spaces." />
37 <param name="none" argument="--none" type="boolean" checked="true" label="(A and NaN) solved as (A)?" /> 36 <param name="none" argument="--none" type="boolean" checked="true" label="(A and NaN) solved as (A)?" />
38 </inputs> 37 </inputs>
39 38
40 <outputs> 39 <outputs>
41 <data format="txt" name="log" label="Expression2RAS - $name - Log" /> 40 <data format="txt" name="log" label="Expression2RAS - $name - Log" />