Mercurial > repos > bimib > cobraxy

comparison COBRAxy/marea.py @ 282:f5635309779a draft

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Uploaded
author francesco_lapi
date Tue, 13 May 2025 09:01:16 +0000
parents 7f37f9626071
children 2436856c7e51
comparison
equal deleted inserted replaced
281:5dd2ab4637aa 282:f5635309779a
433 433
434 def styleReactionElements(self, metabMap :ET.ElementTree, reactionId :str, *, mindReactionDir = True) -> None: 434 def styleReactionElements(self, metabMap :ET.ElementTree, reactionId :str, *, mindReactionDir = True) -> None:
435 # If We're dealing with RAS data or in general don't care about the direction of the reaction we only style the arrow body 435 # If We're dealing with RAS data or in general don't care about the direction of the reaction we only style the arrow body
436 if not mindReactionDir: 436 if not mindReactionDir:
437 return self.applyTo(getArrowBodyElementId(reactionId), metabMap, self.toStyleStr()) 437 return self.applyTo(getArrowBodyElementId(reactionId), metabMap, self.toStyleStr())
438 438 print('PROVA 1')
439 # Now we style the arrow head(s): 439 # Now we style the arrow head(s):
440 idOpt1, idOpt2 = getArrowHeadElementId(reactionId) 440 idOpt1, idOpt2 = getArrowHeadElementId(reactionId)
441 self.applyTo(idOpt1, metabMap, self.toStyleStr(downSizedForTips = True)) 441 self.applyTo(idOpt1, metabMap, self.toStyleStr(downSizedForTips = True))
442 if idOpt2: self.applyTo(idOpt2, metabMap, self.toStyleStr(downSizedForTips = True)) 442 if idOpt2: self.applyTo(idOpt2, metabMap, self.toStyleStr(downSizedForTips = True))
443 443
497 if math.isnan(pValue) or (isinstance(foldChange, float) and math.isnan(foldChange)): continue 497 if math.isnan(pValue) or (isinstance(foldChange, float) and math.isnan(foldChange)): continue
498 498
499 if isinstance(foldChange, str): foldChange = float(foldChange) 499 if isinstance(foldChange, str): foldChange = float(foldChange)
500 if pValue >= ARGS.pValue: # pValue above tresh: dashed arrow 500 if pValue >= ARGS.pValue: # pValue above tresh: dashed arrow
501 INSIGNIFICANT_ARROW.styleReactionElements(metabMap, reactionId) 501 INSIGNIFICANT_ARROW.styleReactionElements(metabMap, reactionId)
502 print('PROVA 2')
502 continue 503 continue
503 504
504 if abs(foldChange) < (ARGS.fChange - 1) / (abs(ARGS.fChange) + 1): 505 if abs(foldChange) < (ARGS.fChange - 1) / (abs(ARGS.fChange) + 1):
505 INVALID_ARROW.styleReactionElements(metabMap, reactionId) 506 INVALID_ARROW.styleReactionElements(metabMap, reactionId)
506 continue 507 continue