Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_generator.py @ 263:f7716d7d7e35 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author francesco_lapi
date Tue, 04 Mar 2025 15:24:44 +0000
parents 1df2d8de156f
children a4f02ba0f64c
comparison
equal deleted inserted replaced
262:d2d6a332d269 263:f7716d7d7e35
224 224
225 gene_in_rule = None 225 gene_in_rule = None
226 226
227 if gene_dup: 227 if gene_dup:
228 if gene_custom == None: 228 if gene_custom == None:
229 print(args.rules_selector)
230 print(args.rules_selector == 'ENGRO2')
229 231
230 if args.rules_selector == 'HMRcore': 232 if args.rules_selector == 'HMRcore':
231 print(1) 233 print(1)
232 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/HMRcore_genes.p', 'rb')) 234 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/HMRcore_genes.p', 'rb'))
233 235
236 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb')) 238 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb'))
237 239
238 elif args.rules_selector == 'ENGRO2': 240 elif args.rules_selector == 'ENGRO2':
239 print(3) 241 print(3)
240 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb')) 242 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb'))
241 243
242 utils.logWarning(f"{args.tool_dir}'/local/pickle files/ENGRO2_genes.p'", ARGS.out_log) 244 utils.logWarning(f"{args.tool_dir}'/local/pickle files/ENGRO2_genes.p'", ARGS.out_log)
243 245
244 gene_in_rule = gene_in_rule.get(type_gene) 246 gene_in_rule = gene_in_rule.get(type_gene)
245 247
246 else: 248 else: